Derive communication features from a kernel
Usage
compute_kernel_features(
kernel,
unifKernel = NULL,
celltypes,
communication_type = "D",
bundle = TRUE,
patient_names = NULL,
Dcell = NULL,
norm = FALSE,
patient_idx = NULL
)Arguments
- kernel
Kernel array from
compute_kernel().- unifKernel
Optional normalized baseline kernel.
- celltypes
Character vector of cell-type labels.
- communication_type
Feature family to compute (
"D","W","TT", or"GSCC").- bundle
Logical; if
TRUE, merge directionally equivalent features where appropriate.- patient_names
Optional patient labels.
- Dcell
Optional abundance matrix required for
"GSCC".- norm
Logical; if
TRUE, compute normalized features when a baseline is supplied.- patient_idx
Optional patient index subset.