Calculate direct communication features from a kernel — calculateDirect • RaCInG

Calculate direct communication features from a kernel

Usage

calculateDirect(kernel, unifKernel = NULL, cells, bundle = TRUE)

Arguments

kernel: Kernel array returned by compute_kernel().
unifKernel: Optional normalized baseline kernel.
cells: Character vector of cell-type names.
bundle: Logical; if TRUE, combine reciprocal directions.

Value

A patient-by-feature data frame of direct communication scores.