Metadata containing the variable to predict
Examples
data(traitData)
head(traitData)
#> Best.Confirmed.Overall.Response binaryResponse Enrollment.IC
#> SAM7f0d9cc7f001 PD SD/PD IC1
#> SAM4305ab968b90 PD SD/PD IC0
#> SAMcf018fee2acd PD SD/PD IC0
#> SAMcc4675f394a1 PD SD/PD IC0
#> SAM49f9b2e57aa5 PD SD/PD IC0
#> SAM2e7aa8fa0ab3 PD SD/PD IC1
#> IC.Level TC.Level Immune.phenotype FMOne.mutation.burden.per.MB
#> SAM7f0d9cc7f001 IC1 TC0 excluded NA
#> SAM4305ab968b90 IC0 TC0 desert 12
#> SAMcf018fee2acd IC0 TC0 excluded NA
#> SAMcc4675f394a1 IC0 TC0 <NA> NA
#> SAM49f9b2e57aa5 IC0 TC0 excluded 5
#> SAM2e7aa8fa0ab3 IC1 TC0 excluded 14
#> Sex Race Intravesical.BCG.administered Baseline.ECOG.Score
#> SAM7f0d9cc7f001 M WHITE N 1
#> SAM4305ab968b90 M WHITE N 1
#> SAMcf018fee2acd M WHITE N 0
#> SAMcc4675f394a1 M WHITE N 1
#> SAM49f9b2e57aa5 M WHITE Y 1
#> SAM2e7aa8fa0ab3 M WHITE N 1
#> Tobacco.Use.History Met.Disease.Status Sample.age
#> SAM7f0d9cc7f001 NEVER Liver more than 2 years
#> SAM4305ab968b90 PREVIOUS Liver more than 2 years
#> SAMcf018fee2acd PREVIOUS Visceral more than 2 years
#> SAMcc4675f394a1 PREVIOUS Liver (less than) 1 year
#> SAM49f9b2e57aa5 PREVIOUS Liver 1-2 years
#> SAM2e7aa8fa0ab3 PREVIOUS Visceral (less than) 1 year
#> Tissue Received.platinum Sample.collected.pre.platinum
#> SAM7f0d9cc7f001 bladder Y Y
#> SAM4305ab968b90 bladder Y N
#> SAMcf018fee2acd lung Y Y
#> SAMcc4675f394a1 liver Y Y
#> SAM49f9b2e57aa5 kidney Y Y
#> SAM2e7aa8fa0ab3 kidney N <NA>
#> Neoantigen.burden.per.MB sizeFactor ANONPT_ID os censOS
#> SAM7f0d9cc7f001 NA 0.6498134 10220 4.632444 1
#> SAM4305ab968b90 0.3921569 1.3451211 10375 1.412731 1
#> SAMcf018fee2acd NA 1.7799627 10175 16.229979 1
#> SAMcc4675f394a1 NA 1.1994070 10142 3.121150 1
#> SAM49f9b2e57aa5 1.4509804 0.9977972 10037 7.457906 1
#> SAM2e7aa8fa0ab3 2.7058824 1.2795319 10172 7.720739 1
#> Lund Lund2 TCGA.Subtype
#> SAM7f0d9cc7f001 MS2b1 Infiltrated II
#> SAM4305ab968b90 MS1b UroA I
#> SAMcf018fee2acd MS1a UroA I
#> SAMcc4675f394a1 MS1a UroA I
#> SAM49f9b2e57aa5 MS1b UroA I
#> SAM2e7aa8fa0ab3 MS1b UroA II