Randomly keeps at most n_cells_per_type cells of each cell type. Used to limit the size of the
single-cell reference for CPM in compute_sc_deconvolution_methods().
Usage
stratified_sample_cells(
SCData,
SCData_metadata,
cell_label,
n_cells_per_type = 500,
seed = 123
)Arguments
- SCData
A count matrix (genes x cells); its column names must match the row names of
SCData_metadata.- SCData_metadata
A data frame with one row per cell (row names = cell names).
- cell_label
Name of the metadata column with the cell type labels.
- n_cells_per_type
Maximum number of cells kept per cell type.
- seed
Random seed for the sampling.