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Computes CIBERSORTx (CBSX) using one signature

Source: R/cell_deconvolution.R
computeCBSX.Rd

Computes CIBERSORTx (CBSX) using one signature

Usage

computeCBSX(TPM_matrix, signature_file, name, password, name_signature)

Arguments

TPM_matrix

A matrix with TPM normalized counts (genes symbols as rows and samples as columns).

signature_file

The signature file to use.

name

Credential email for running CIBERSORTx.

password

Credential token for running CIBERSORTx.

name_signature

Signature name to set for the deconvolution results.

Value

A matrix with cell abundance deconvolve with CBSX