Compute GSCC features from kernel matrices
Usage
computeGSCC(
kernel,
Dcell,
cell_names,
patient_names,
unifKernel = NULL,
norm = FALSE,
lab = 1
)Arguments
- kernel
Kernel array from
compute_kernel().- Dcell
Patient-by-cell-type abundance matrix.
- cell_names
Character vector of cell-type labels.
- patient_names
Character vector of patient names.
- unifKernel
Optional normalized baseline kernel.
- norm
Logical; if
TRUE, divide by the baseline GSCC values.- lab
Scaling factor for interaction strengths.