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Compute CIBERSORTx (CBSX) in parallel across multiple signatures

Source: R/cell_deconvolution.R
computeCBSX_parallel.Rd

Compute CIBERSORTx (CBSX) in parallel across multiple signatures

Usage

computeCBSX_parallel(TPM_matrix, signatures, name, password, workers)

Arguments

TPM_matrix

A matrix with TPM normalized counts (genes symbols as rows and samples as columns).

signatures

Path where signatures files are located

name

Credential email for running CIBERSORTx.

password

Credential token for running CIBERSORTx.

workers

Number of processes available to run on parallel.

Value

A matrix with cell abundance deconvolve with CBSX