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Cell types split from deconvolution

Source: R/cell_deconvolution.R
compute.cell.types.Rd

Cell types split from deconvolution

Usage

compute.cell.types(data, cells_extra = NULL)

Arguments

data

A matrix with the deconvolution results

cells_extra

A string specifying the cells names to consider and that are not including in the nomenclature of multideconv (see Readme)

Value

A list containing:

  • A sublist with each cell type features as an element recover from the different signatures

  • Discarded cell types (this will happen if the cell types are not supported. See the READme for more information about this)

Examples


data("deconvolution")

cells_types = multideconv:::compute.cell.types(deconvolution)
cells = cells_types[[1]]
cells_discarded = cells_types[[2]]
extra_cells <- c("mesenchymal", "basophils")
cells_types <- multideconv:::compute.cell.types(
  deconvolution,
  cells_extra = extra_cells
)