Generate a graph under a uniformized ligand-receptor baseline — generateUniformLRGraph • RaCInG

Generate a graph under a uniformized ligand-receptor baseline

Usage

generateUniformLRGraph(
  LRdistr,
  Lmatrix,
  Rmatrix,
  Cdistr,
  cellTypes,
  patient = 1,
  N = 20,
  avdeg = 2
)

Arguments

LRdistr: Ligand-receptor tensor.
Lmatrix: Cell-by-ligand compatibility matrix.
Rmatrix: Cell-by-receptor compatibility matrix.
Cdistr: Patient-by-cell-type abundance matrix.
cellTypes: Character vector of cell-type labels.
patient: Patient index to simulate.
N: Number of cells in the generated graph.
avdeg: Target average degree.

Value

A list containing the simulated graph and the uniform LR distribution used.