Count direct edges across Monte Carlo graph simulations

Count direct edges across Monte Carlo graph simulations

Usage

countDirect(Dcell, Dconn, lig, rec, cellnames, N, av, itNo)

Arguments

Dcell

Cell-type abundance vector for one patient.

Dconn

Ligand-receptor probability matrix for one patient.

lig

Cell-by-ligand compatibility matrix.

rec

Cell-by-receptor compatibility matrix.

cellnames

Character vector of cell-type names.

N

Number of cells per simulated graph.

av

Target average degree.

itNo

Number of Monte Carlo iterations.

Value

A list of average and standard-deviation direct edge counts.