Identify cell groups

Identifies cell dendrograms corresponding to each TF module group based on correlation with deconvolution features.

Usage

# S3 method for class 'cell.groups'
identify(
  features,
  clustering.method = "ward.D2",
  width = 12,
  height = 18,
  return = T
)

Arguments

features

A list with two named elements:

correlations

A matrix of correlations between TF modules and cell type features.

significant

A named list of significant features per TF module (e.g., p-value < 0.05).

clustering.method

Clustering method used in hclust. Default: "ward.D2".

width

Width of the saved PDF plots.

height

Height of the saved PDF plots.

return

Logical; whether to save dendrogram plots to the "Results/" folder.

Value

A named list of dendrograms for each TF module.